Monday, June 27, 2011

DNA tells the Tale of Two Branches of the Coconut Palm



(This fascinating article is a republish courtesy of the Washington University St. Louis. Original article published on June 23 online issue of the journal PLoS One.)

The “Coconut”, the fruit of the palm Cocos nucifera, is the Swiss Army knife of the plant kingdom. In one neat package it provides a high-calorie food, potable water, fiber that can be spun into rope, and a hard shell that can be turned into charcoal. What’s more, until it is needed for some other purpose it serves as a handy flotation device.

No wonder people from ancient Austronesians to Captain Bligh pitched a few coconuts aboard before setting sail. The mutiny of the "Bounty" is supposed to have been triggered by Bligh’s harsh punishment of the theft of coconuts from the ship’s store.

So extensively is the history of the coconut interwoven

with the history of people traveling that Kenneth Olsen, a plant evolutionary biologist, didn’t expect to find much geographical structure to coconut genetics when he and his colleagues set out to examine the DNA of more than 1,300 coconuts from all over the world.

“I thought it would be mostly a mish-mash,” he says, thoroughly homogenized by humans schlepping coconuts with them on their travels.

He was in for a surprise. It turned out that there are two clearly differentiated populations of coconuts, a finding that strongly suggests the coconut was brought under cultivation in two separate locations, one in the Pacific basin and the other in the Indian Ocean basin. What’s more, coconut genetics also preserve a record of prehistoric trade routes and of the colonization of the Americas.

The discoveries of the team, which included Bee Gunn, now of the Australian National University in Australia, and Luc Baudouin of the Centre

International de Recherches en Agronomie pour le Développement in Montpellier, France, as well as Olsen, associate professor of biology at Washington University in St. Louis, are described in the June 23 online issue of the journal PLoS One.

Before the DNA era, biologists recognized a domesticated plant by its morphology. In the case of grains, for example, one of the most important traits in domestication is the loss of shattering, or the tendency of seeds to break off the central grain stalk once mature.

The trouble was it was hard to translate coconut morphology into a plausible evolutionary history.

There are two distinctively different forms of the coconut fruit, known as niu kafa and niu vai, Samoan names for traditional

Polynesian varieties. The niu kafa form is triangular and oblong with a large fibrous husk. The niu vai form is rounded and contains abundant sweet coconut “water” when unripe.

“Quite often the niu vai fruit are brightly colored when they’re unripe, either bright green, or bright yellow. Sometimes they’re a beautiful gold with reddish tones,” says Olsen.

Coconuts have also been traditionally classified into tall and dwarf varieties based on the tree habit, or shape. Most coconuts are talls, but there are also dwarfs that are only several feet tall when they begin reproducing. The dwarfs account for only 5 percent of coconuts.

Dwarfs tend to be used for eating fresh, and the tall forms for coconut oil and for fiber.

“Almost all the dwarfs are self fertilizing and those three traits — being dwarf, having the rounded sweet fruit, and being self-pollinating — are thought to be the definitive domestication traits,” says Olsen.

“The traditional argument was that the niu kafa form was the wild, ancestral form that didn’t reflect human selection, in part because it was better adapted to ocean dispersal,” says Olsen. Dwarf trees with niu vai fruits were thought to be the domesticated form.

The trouble is it’s messier than that. “You almost always find coconuts

near human habitations,” says Olsen, and while the niu vai is an obvious domestication form, the niu kafa form is also heavily exploited for copra, the dried meat ground and pressed to make oil, and coir, fiber woven into rope.”

“The lack of universal domestication traits together with the long history of human interaction with coconuts, made it difficult to trace the coconut’s cultivation origins strictly by morphology,” Olsen says.

The project got started when Ms. Gunn, who had long been interested in palm evolution, and who was then at the Missouri Botanical Garden, contacted Olsen, who had the laboratory facilities needed to study palm DNA.

Together they won a National Geographic Society grant that allowed Ms. Gunn to collect coconut DNA in regions of the western Indian Ocean for which there were no data. The snippets of leaf tissue from the center of the coconut tree’s crown she sent home in zip-lock bags to be analyzed.

“We had reason to suspect that coconuts from these regions —especially Madagascar and the Comoros Islands — might show evidence of ancient gene flow events brought about by ancient Austronesians setting up migration routes and trade routes across the southern Indian Ocean,” Olsen says.

Olsen’s lab genotyped 10 microsatellite regions in each palm sample.

Microsatellites are regions of stuttering DNA where the same few nucleotide units are repeated many times. Mutations pop up and persist pretty easily in these regions because they usually don’t affect traits that are important to survival and so aren’t selected against, says Olsen. “So we can use these genetic markers to fingerprint the coconut,” he says.

The new collections were combined with a vast dataset that had been established by the French agricultural research center, using the same genetic markers. “These data were being used for things like breeding, but no one had gone through and systematically examined the genetic variation in the context of the history of the plant,” Olsen says.

The most striking finding of the new DNA analysis is that the Pacific and Indian Ocean coconuts are quite distinct genetically. “About a third of the total genetic diversity can be partitioned between two groups that correspond to the Indian Ocean and the Pacific Ocean,” says Olsen.


“That’s a very high level of differentiation within a single species and provides pretty conclusive evidence that there were two origins of cultivation of the coconut,” he says.

In the Pacific, coconuts were likely first cultivated in island Southeast Asia, meaning the Philippines, Malaysia, Indonesia, and perhaps the continent as well. In the Indian Ocean the likely center of cultivation was the southern periphery of India, including Sri Lanka, the Maldives, and the Laccadives.

The definitive domestication traits — the dwarf habit, self-pollination and niu vai fruits — arose only in the Pacific, however, and then only in a small subset of Pacific coconuts, which is why Olsen speaks of origins of cultivation rather than of domestication.

“At least we have it easier than scientists who study animal domestication,” he says. “So much of being a domesticated animal is being tame, and behavioral traits aren’t preserved in the archeological record.”

One exception to the general Pacific/Indian Ocean split is the western Indian Ocean, specifically Madagascar and the Comoros Islands, where Ms. Gunn had collected. The coconuts there are a genetic mixture of the Indian Ocean type and the Pacific type.

Olsen and his colleagues believe the Pacific coconuts were introduced to

the Indian Ocean a couple of thousand years ago by ancient Austronesians establishing trade routes connecting Southeast Asia to Madagascar and coastal east Africa.

Olsen points out that no genetic admixture is found in the more northerly Seychelles, which fall outside the trade route. He adds that a recent study of rice varieties found in Madagascar shows there is a similar mixing of the japonica and indica rice varieties from Southeast Asia and India.

To add to the historical shiver, the descendants of the people who brought the coconuts and rice are still living in Madagascar. The present-day inhabitants of the Madagascar highlands are descendants of the ancient Austronesians, Olsen says.

Much later the Indian Ocean coconut was transported to the New World by Europeans. The Portuguese carried coconuts from the Indian Ocean to the West Coast of Africa, Olsen says, and the plantations established there were a source of material that made it into the Caribbean and also to coastal Brazil.

So the coconuts that found today in Florida are largely the Indian Ocean type, Olsen says, which is why they tend to have the niu kafa form.


On the Pacific side of the New World tropics, however, the coconuts are Pacific Ocean coconuts. Some appear to have been transported there in pre-Columbian times by ancient Austronesians moving east rather than west.

During the colonial period, the Spanish brought coconuts to the Pacific coast of Mexico from the Philippines, which was for a time governed on behalf of the King of Spain from Mexico.

This is why, Olsen says, you find Pacific type coconuts on the Pacific coast of Central America and Indian type coconuts on the Atlantic coast.

“The big surprise was that there was so much genetic differentiation clearly correlated with geography, even though humans have been moving coconut around for so long.”

Far from being a mish-mash, coconut DNA preserves a record of human cultivation, voyages of exploration, trade and colonization.

With the above information, we now know more about the colonization around the world by just following the leads of the coconut DNA! So if you

haven’t tried the different varieties of Coconut found around the world, and more specifically, the types found here in Costa Rica, why wait any longer? Whether looking for a refreshing and healthy beverage (think “Pipa” in Costa Rica), or a tasty snack or unique flavor for whatever dish you may be preparing (think “Coco” in Costa Rica), both types are readily available on both coasts, so get your Tropical vibe on!!

Much more about coconuts in future blog posts!! It’s the fruit that keeps on giving!!

Author:
Kimberly Barron, originally from Malibu, California has lived in Parismina and Manuel Antonio, Costa Rica for 20 years. Starting as a certified tour guide, she spent 15 years managing fishing lodges on the Caribbean Coast and later 4* & 5* Hotels on the Pacific Coast of Costa Rica. Currently semi-retired, Kimberly still works as the Marketing Director for Byblos Resort & Casino and Hotel Makanda by the Sea.

Sources:
www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0021143
Bee F. Gunn1, Luc Baudouin2, Kenneth M. Olsen3*
1 Division of Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, Australia, 2 Centre International de Recherches en Agronomie pour le Développement (CIRAD), Montpellier, France, 3 Biology Department, Washington University, St. Louis, Missouri, United States of America
www.amcostarica.com
www.wikipedia.org/wiki/Cocos_nucifera
www.kew.org/plant-cultures/plants/coconut_history.html
www.wikipedia.org/wiki/Indian_Ocean
www.islandsbusiness.com/islands_business/index_dynamic/containerNameToReplace=MiddleMiddle/focusModuleID=19252/overideSkinName=issueArticle-full.tpl
www.cookislands.bishopmuseum.org/showarticle.asp?id=15
http://www.mobot.org/

Saturday, June 11, 2011

The Tourist Tree? The Naked Indian Tree? It’s the Gumbo Limbo Tree in Costa Rica!

Living in the rainforest in Costa Rica means being surrounded by an abundance of interesting trees. One of my personal favorites is the Gumbo Limbo tree! A wildly popular tropical tree, it is native to the southeastern United States, but found widely throughout the Americas, West Indies and especially prominent in Costa Rica. This tree easily adapts to a variety of both dry and moist habitats, and is a fairly salt-tolerant species, enabling this tree to be found along most coastlines including around the Hotels of Manuel Antonio, Costa Rica. Though consisting of a fairly soft wood, the Gumbo Limbo is considered a very wind-tolerant tree, making this species a good choice for hurricane or extreme weather areas.


This fast-growing canopy tree reaches heights of 50-60 feet and more, with a trunk that bears a striking color of green and red, with a thin paper like exfoliating bark. The Gumbo Limbo or Bursera Simaruba, goes by several aliases, such as the Spirit Gum, Birch Gum, Turpentine, Naked Indian, or more commonly named in popular vacation destinations…..the “Tourist Tree”, because of its red color and peeling skin!

The Gumbo-limbo is generally planted for shade and ornamental use in front or backyards, can be found along streets and highways, but it is also commonly used throughout Costa Rica as a “living fence” since it easily sprouts from cut branches that are stuck into the ground. With it’s naturally rapid growth, within no time farmers have a strong, natural, eco-friendly fence with which they can corral their livestock and mark their land.

The arils (or etable part surrounding the seed) provides an important source of food for winter migrating birds, including many migrants from North America, as well as local residents such as the Masked Tityra, Bright-rumped Attila, and Black-faced Grosbeak, the Baltimore Oriole, Dusky-capped Flycatcher and many species of Vireos. Additionally, Gumbo-limbo's rapid growth, easy and low cost of propagation, and it’s ecological versatility make this species an ideal "starter" tree for reforestation projects.

There are so many more natural benefits to this great tree, as the sticky, turpentine-scented resin has been used for centuries for making glue, varnish, liniments, as well as a water resistant coating for dugout canoes. The aromatic sap is also used as an anti-inflammatory, a treatment for gout, a form of incense, as well as the leaves are brewed to make a medicinal tea for a wide variety of ailments. The bark is also considered a treatment against rashes caused by plants such as poison ivy and poison oak. Though the actual wood of the tree is rather soft and spongy, this versatile wood is traditionally used to manufacture the colorful carousel horses you see at county fairs, and other small wood products such as matchsticks, toothpicks, charcoal, boxes, crates, and interior trim have also been made from the Gumbo-Limbo wood.

Tribal or Native Indian medicinal uses include remedies for skin infections, skin sores, ingesting a bark tea for urinary tract infections, pain, colds, flu, sun stroke, fevers and to purify the blood. A length of bark about 5 cm x 30 cm is boiled in a gallon of water for 10 minutes or so for these local remedies and then used topically or can be sipped as a tea 2-3 times per day. Not only is it touted to provide the above medicinal remedies, but it is also said to kill bacteria, stop excessive bleeding, increase urination, increase perspiration, cleanse the blood, neutralize various venoms, helpful as a cough expectorate, reducing fevers and my favorite remedy…..increasing libido!!

So when out hiking, exploring, or just taking a drive around Costa Rica, no more passing that Gumbo Limbo tree and not even giving it a second thought. Just look at how much one can do and “cure” with this beautiful and unique tree!

But my friends…..you have been warned!!!! None of these uses are FDA approved, so please do not try these remedies at home! At least not without a Shaman present!!

Author:
Kimberly Barron, originally from Malibu, California has lived in Parismina and Manuel Antonio, Costa Rica for 20 years. Starting as a certified tour guide, she spent 15 years managing fishing lodges on the Caribbean Coast and later 4* & 5* Hotels on the Pacific Coast of Costa Rica. Currently semi-retired, Kimberly still works as the Marketing Director for Byblos Resort & Casino and Hotel Makanda by the Sea.

Sources:
http://www.sfrc.ufl.edu/4h/Gumbo-limbo/gumblimb.htm
http://en.wikipedia.org/wiki/Bursera_simaruba
http://www.regionalconservation.org/beta/nfyn/plantdetail.asp?tx=Burssima
http://www.plantcreations.com/bursera_simaruba.htm